PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn131561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 1253aa    MW: 139397 Da    PI: 6.5456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn131561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10146220181
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                 f+k ++ps+v+   +l lp  f++++ ++k+   tltl de+g+++   +    ++  + l++GW++F  ++gL +gD + 
  Achn131561 146 FVKPMLPSHVTGGFWLGLPSYFCNNI-LPKND-GTLTLVDEEGEEYPTVY--LARK--FGLSGGWRGFSIEHGLVDGDALR 220
                 89*********************666.45444.49***************..4444..77******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF040844.6E-121662IPR007220Origin recognition complex, subunit 2
Gene3DG3DSA:2.40.330.105.1E-12142219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-15142220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.52E-19144219No hitNo description
PROSITE profilePS508639.375146243IPR003340B3 DNA binding domain
SMARTSM010199.8E-12146235IPR003340B3 DNA binding domain
PfamPF023626.0E-9146221IPR003340B3 DNA binding domain
PfamPF042781.6E-25219321IPR007378Tic22-like
PfamPF042783.2E-33318396IPR007378Tic22-like
PfamPF057012.1E-16539577IPR008545WEB family
PfamPF057011.9E-2126241157IPR008545WEB family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0000808Cellular Componentorigin recognition complex
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1253 aa     Download sequence    Send to blast
MERPCLLFTF FLERSTCGFG LLMYGIGSKK ALLEDFASTV LTECRVLVIN GYLPSINLKQ  60
AKKATPRIIR KELVAVRRSG RISKSPAPVY KEIVTYERFE YSRRNLSGVY KRDLSNRVYA  120
SDEARATAIT RAEELELGLG ADYPTFVKPM LPSHVTGGFW LGLPSYFCNN ILPKNDGTLT  180
LVDEEGEEYP TVYLARKFGL SGGWRGFSIE HGLVDGDALR LGGELASRLG DTRRLAAAAA  240
QKRCRLLPPP SLSSLPFASV KHAFDVALSS NHVAKTLSGT SVFTVSNSNN EFVLISDPNS  300
MKSIGLLCFR KEDADAFLAQ VYMLKVEGIA FRFMPDPVQI KNALELKASD IKSGFDGVPI  360
FQSDLLVVKK KNRRYCPIYF RKVGSLEDVL KKMERVVGME AAENTEVNCP PESTGAPSLS  420
SQNKDRSNNE DPINEDVKRE VVDFSKLSTK DENGINNTTT TTEEENVRVL AEPISTNTSE  480
AKPKDALEKS PRVKDTENDH HVVHSNAVAL PRAQVTEDAI EMPVAIYPSK HLKKVDTNRV  540
QIDTAAPFES VKAAVSKFGG IVDWKAHRVQ TVEEITCVIA FMNLYFITFF FYTARVARDG  600
KNQTVYTFIN GFTSSKNNCK FLCRHMQKRK VIEDELEKAQ AEIPLYKKQS ETAEDAKIRV  660
LKELDSTKRL IEELKLNLER AQTEEHQAKQ DSELAKLRVE EMAQGIADEA SVAAKAQLEV  720
ARARHTAAVS ELQTVKDELK QLRKNYDSIV MDKDLAVKRA EEAVSESNEV EKTVEELMID  780
LITTQESLDS AHAAHLEAEE KKIGAAMARE QDTLNWEKEL KQAEEELERL NQQISSAKDL  840
KSKLITASAL LADLKIELGA YMASKLEEEI NDGGELEGPE KRTHSDIQAA VDSTKKELEE  900
VKLSIEKATA EVKCFKVAVA SLKVELEREK SELAVLSQRE GMASVTVASI EAEVSRTRLE  960
IAVIQTKERE AKEKMVELPK QLQEAAQEAD QAKSLAQTAR EELCKAKEEA EQAKAAASTM  1020
ESRLLAARKE IEAAKASEQL ALSAINALKE SELSQITKGE DSPAGVTLSL EEYYELSKRA  1080
HDAEEQTNTR VAAAVSQIEL AKESELRSLK KLEEVGLEMA AQKEALEIAL QKAEKAKGGK  1140
LGVEQELRKW RAESEQRRKV GELGQGQEVK QVKSPRASVE ERKEFKESNN FVQLPDAPIQ  1200
HSLSPRAAHV SGNNTETKPS LEVKVVKQKK KSFFSRIFMF MVKKKARGTK SM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367373VKKKNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3821421e-54FQ382142.1 Vitis vinifera clone SS0ABG6YA13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017248.10.0Golgin subfamily A member 3 isoform 2
RefseqXP_007017249.10.0Golgin subfamily A member 3 isoform 2
SwissprotO487240.0WEB1_ARATH; Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
TrEMBLA0A061FC410.0A0A061FC41_THECC; Golgin subfamily A member 3 isoform 2
STRINGVIT_18s0001g10560.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-38B3 family protein